Yousef, M.; Kumar, A.; Bakir-Gungor, B. Application of Biological Domain Knowledge Based Feature Selection on Gene Expression Data. Entropy 2021, 23, 2.

Abdallah, L.; Badarna, M.; Khalifa, W.; Yousef, M. MultiKOC: Multi-One-Class Classifier Based K-Means Clustering. Algorithms 2021, 14, 134.

Yousef, M.; Allmer, J. Classification of Precursor MicroRNAs from Different Species Based on K-mer Distance Features. Algorithms 2021, 14, 132.

Yousef, M., Showe, L. & Ben Shlomo, I. (2021). Clinical presentation of COVID-19 – a model derived by a machine learning algorithm: . Journal of Integrative Bioinformatics, 18(1), 3-8.

Yousef M, Ülgen E, Uğur Sezerman O. 2021. CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis. PeerJ Computer Science 7:e336

Yousef M, Goy G, Mitra R, Eischen CM, Jabeer A, Bakir-Gungor B. 2021. miRcorrNet: machine learning-based integration of miRNA and mRNA expression profiles, combined with feature grouping and ranking. PeerJ 9:e11458

Uttarilli, A., Amalakanti, S., Kommoju, P., Sharma, S., Goyal, P., Manjunath, G., Upadhayay, V., Parveen, A., Tandon, R., Prasad, K., Dakal, T., Ben Shlomo, I., Yousef, M., Neerathilingam, M. & Kumar, A. (2021). Super-rapid race for saving lives by developing COVID-19 vaccines: . Journal of Integrative Bioinformatics, 18(1), 27-43.

Marcos-Zambrano LJ, Karaduzovic-Hadziabdic K, Loncar Turukalo T, Przymus P, Trajkovik V, Aasmets O, Berland M, Gruca A, Hasic J, Hron K, Klammsteiner T, Kolev M, Lahti L, Lopes MB, Moreno V, Naskinova I, Org E, Paciência I, Papoutsoglou G, Shigdel R, Stres B, Vilne B, Yousef M, Zdravevski E, Tsamardinos I, Carrillo de Santa Pau E, Claesson MJ, Moreno-Indias I and Truu J (2021) Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment. Front. Microbiol. 12:634511.

Malik Yousef, Abhishek Kumar and Burcu Bakir-Gungor (2021), Application of Biological Domain Knowledge Based Feature Selection on Gene Expression Data. Entropy

Malik Yousef, Louise Show and Izhar Ben Shlomo(2020), Machine Learning Analysis of National Vaccination Schedules and Rates of Compliance Reveals Correlation with COVID_19 Mortality. International Journal for Computational Biology (IJCB)

Malik Yousef, Jamal Al Qundus, Adrian Paschke, Silvio Peikert(2020), TopicsRanksDC: Distance-based Topic Ranking applied on Two-Class Data. DEXA 2020. Communications in Computer and Information Science, Springer, Cham

Malik Yousef, Burcu Bakir-Gungor, Amhar Jabeer, Rehman Qureshi and Louise C. Showe(2020), Recursive Cluster Elimination based Rank Function (SVM-RCE-R) Implemented in Knime. F1000Research

Luise Odenthal1, Jens Allmer and Malik Yousef (2020), A Machine Learning-based Approach for the Categorization of MicroRNAs to their Species of Origin, International Conference on Bioinformatics Models, Methods and Algorithms. Proceedings of BIOSTEC 2020, 13th International Joint Conference on Biomedical Engineering Systems and Technologies

Loai Abdallah; Malik Yousef (2020), GrpClassifierEC: A Novel Classification Approach Based on the Ensemble Clustering Space. Algorithms Mol Biol 15, 3 (2020)

Jamal Alqunds and Malik yousef (2020), Exploring the Effects of Text Complexity on its Quality in Social Medi, Journal of Enterprise Information Management.

Al Qundus, J., Paschke, A., Gupta, S., Alzouby, A.M. and Yousef, M. (2020), "Exploring the impact of short-text complexity and structure on its quality in social media", Journal of Enterprise Information Management, Vol. 33 No. 6, pp. 1443-1466.

Abdallah, L., Yousef, M. GrpClassifierEC: a novel classification approach based on the ensemble clustering space. Algorithms Mol Biol 15, 3 (2020).

Malik Yousef (2019), Hamming Distance and K-mer Features for Classification of Pre-Cursor microRNAs from Different Species. In: Benavente-Peces C., Slama S., Zafar B. (eds) Proceedings of the 1st International Conference on Smart Innovation, Ergonomics and Applied Human Factors (SEAHF). SEAHF 2019. Smart Innovation, Systems and Technologies, vol 150. Springer, Cham

Malik Yousef and Jens Allmer (2019), Classification of Pre-Cursor microRNAs from Different Species using a New Set of Features. In: Elloumi M. et al. (eds) Database and Expert Systems Applications. DEXA 2019. Communications in Computer and Information Science, Springer, Cham.

Malik Youse, Loai Abdalla and Jens Allmer (2019), maTE: Discovering Expressed MicroRNA - Target Interactions. Bioinformatics, Volume 35, Issue 20, 15 October 2019, Pages 4020–4028.