ד"ר אלכסנדר צ'ורקין
Dr. Alexander Churkin

מוסד עיקרי

המכללה האקדמית להנדסה על שם סמי שמעון Shamoon College of Engineering

טלפון

08-6475281

דוא״ל

alexach3@sce.ac.il

דיסציפלינות ראשיותMain Disciplines

Bioinformatics, Computational and Systems Biology, Computer Sciences

דיסציפלינות משניותSecondary Disciplines

Scientific Computing

תחומי מחקר / מילות מפתחKeywords

Monte Carlo Methods, Optimization, RNA Bioinformatics, Viral Dynamics

פרסומים ויצירות עיקריים / עדכנייםMain / Recent Publications

Churkin, A.; Totzeck, F.; Zakh, R.; Parr, M.; Tuller, T.; Frishman, D.; Barash, D. A Mathematical Analysis of RNA Structural Motifs in Viruses. Mathematics 2021, 9, 585.
Alexander Churkin, Shlomi Matityahu, Andrii O. Maksymov, Alexander L. Burin, and Moshe Schechter (2021) Anomalous low-energy properties in amorphous solids and the interplay of electric and elastic interactions of tunneling two-level systems, Phys. Rev. B 103,
Alexander Churkin, Yann Ponty, Danny Barash. IndelsRNAmute: Predicting deleterious multiple point substitutions and indels mutations. ISBRA 2020 - 16th International Symposium on Bioinformatics Research and Applications, Dec 2020, Moscow, Russia
Churkin, A.; Lewkiewicz, S.; Reinharz, V.; Dahari, H.; Barash, D. Efficient Methods for Parameter Estimation of Ordinary and Partial Differential Equation Models of Viral Hepatitis Kinetics. Mathematics 2020, 8, 1483.
Evan Gorstein, Marianne Martinello, Alexander Churkin, Swikriti Dasgupta, Kevin Walsh, Tanya L. Applegate, David Yardeni, Ohad Etzion, Susan L. Uprichard, Danny Barash, Scott J. Cotler, Gail V. Matthews, Harel Dahari, Modeling based response guided therapy in subjects with recent hepatitis C infection, Antiviral Research, Volume 180, 2020,
Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash, incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs, Bioinformatics, Volume 36, Issue 9, 1 May 2020, Pages 2920–2922
Rabaev, B. Kurar Barakat, A. Churkin and J. El-Sana, "The HHD Dataset," 2020 17th International Conference on Frontiers in Handwriting Recognition (ICFHR), 2020, pp. 228-233
Swikriti Dasgupta, Michio Imamura, Evan Gorstein, Takashi Nakahara, Masataka Tsuge, Alexander Churkin, David Yardeni, Ohad Etzion, Susan L Uprichard, Danny Barash, Scott J Cotler, Harel Dahari, Kazuaki Chayama, Modeling-Based Response-Guided Glecaprevir-Pibrentasvir Therapy for Chronic Hepatitis C to Identify Patients for Ultrashort Treatment Duration, The Journal of Infectious Diseases, Volume 222, Issue 7, 1 October 2020, Pages 1165–1169,
Reinharz, V., Churkin, A., Lewkiewicz, S. et al. A Parameter Estimation Method for Multiscale Models of Hepatitis C Virus Dynamics. Bull Math Biol 81, 3675–3721 (2019).

ד"ר אלכסנדר צ'ורקין Dr. Alexander Churkin

ד"ר אלכסנדר צ'ורקין
Dr. Alexander Churkin